CDS

Accession Number TCMCG042C50907
gbkey CDS
Protein Id XP_016483043.1
Location join(24424..24525,24623..24761,24841..24969,25050..25423,26144..26215,26319..26396,26493..27396,27913..28043,29502..29723,31908..32447,36594..36803,37202..37306)
Gene LOC107803785
GeneID 107803785
Organism Nicotiana tabacum

Protein

Length 1001aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016627557.1
Definition PREDICTED: helicase-like transcription factor CHR28 isoform X4 [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category L
Description SNF2 family N-terminal domain
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K15083        [VIEW IN KEGG]
ko:K15173        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04918        [VIEW IN KEGG]
map04918        [VIEW IN KEGG]
GOs GO:0000228        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000724        [VIEW IN EMBL-EBI]
GO:0000725        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000790        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003678        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004003        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008270        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009895        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0009991        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0030162        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031330        [VIEW IN EMBL-EBI]
GO:0031668        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032392        [VIEW IN EMBL-EBI]
GO:0032434        [VIEW IN EMBL-EBI]
GO:0032435        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032508        [VIEW IN EMBL-EBI]
GO:0033260        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042176        [VIEW IN EMBL-EBI]
GO:0042177        [VIEW IN EMBL-EBI]
GO:0042262        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043169        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044786        [VIEW IN EMBL-EBI]
GO:0045005        [VIEW IN EMBL-EBI]
GO:0045861        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046872        [VIEW IN EMBL-EBI]
GO:0046914        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061136        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071496        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140083        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901799        [VIEW IN EMBL-EBI]
GO:1902298        [VIEW IN EMBL-EBI]
GO:1902969        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]
GO:1903050        [VIEW IN EMBL-EBI]
GO:1903051        [VIEW IN EMBL-EBI]
GO:1903362        [VIEW IN EMBL-EBI]
GO:1903363        [VIEW IN EMBL-EBI]
GO:1990505        [VIEW IN EMBL-EBI]
GO:2000058        [VIEW IN EMBL-EBI]
GO:2000059        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCGTGCCCATGTGGATCCTGTTGGTGGTTTTCTAGAGTATGCTCGTACCTTCTTCTTTAATCTGGTTATTAACTTGCTTTTAAGACATCGCTCCCATCTGGTTGGTTCTATATTCTCTCCAATGGATGCAATTAGTATCTCTTCGGATGATTCGGATTTGCGTGAAATAGACAACTACAAAGATGATTCACCTCTCAGGGATTCTGCCAGTTCTCGAATCCTTCCACCATGGGGAACAGATAGCTCGTCCAAAAGAACAATTTATCCTAATGGAAGCTCCTCCAACTATCATAATATTACTGATGACAGTGGACCATCAAGTTCACGAGCAAGTAGAGACGGGAATTCCAAGTATTCTTCTGGGAATGATAATGGAAAGCATTTTCCACAGCAAACTTTAAAGCGTACACTTCCAACATCTTTTTATCCTTCTGGCTCAGTAGAGGATATAGGTTTCAGTCAGGCTCGTCAATCTCATGAAAGATCATACCAATCTGCATGGGCAAGTTCGAGCAGTGCTGGTGATAACTACTGGAAAGACAGTTTCAACAGGGGCAACCATAGTGAGTTAGTTCTCTATGAAAATAAAGGAAACAGAGTGTTACCTCCGTCTTTGATGCACAGAAGGTCCACTTCAGGTGTTCAACATATCAGTGTAAATGATCCCTTACATTACCCTGCGAAAGGTGAAGACAGAGCTGCAGCAGCTGATGAGAGACTGATCTTTCAAGCTGCTCTGCAGGATTTAAACCAACCTAAGGTAGAGGCTCGTCTGCCAGATGGTCTTTTGTCAGTTTCTCTCCTAAGACACCAGAGAATTGCTTTGGCGTGGACACTTCAAAAAGAAACTGGTAGTGTTCATTGTTCGGGTGGTATTCTGGCTGATGATCAGGGTCTTGGTAAGACTATTTCAATGATTGCCCTCATACAGATGCAGAGGTCAGCTCAGGATAAGTCTAAAGAGAAAGATCTGGATGATATTAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAAAATGTTGCTCCTGCTTCTCAGGAATTAAAACAGCGTAGAGAGACAGATGGTGTCGAGGTGATTCCAGATGCAAGAACTTCTATAAAGGGGTTTCGTCGTAGGAGGCCAGCAGCTGGTACTTTGGTAGTTTGCCCAGCAAGTGTTCTTCGACAATGGGCTCGGGAACTGGATGAGAAAGTTACGGATGAAGCAAGTCTATCTATTTTAATCTATCATGGAGGCAATAGGACTAAGGATCCGGTGGAATTGGCAAAATATGACGTGGTTCTAACTACATATGCCATTGTGACAAATGAAGTTCCTAAACAAGCTTTAGTTGAAGAGGATGACGATGACCAGAAAAATGGAGAACGATTCGGAATATCTTCTGACTTCAATTCAAGTAAGAAGCGGAAAAAGCCATCTCTTAATAAGAAGGGAAAAAAAGGCAGAAAAGGATTTGATGCAGATGACTTTGATCCTAATTGTGGTGGTCTTGCCAAAGTCAGTTGGTTTAGGGTGATTTTAGATGAAGCCCAGACAATAAAGAATCATAGAACACAAGTAGCTAGAGCATGCTGCAGCCTCAGAGCAAAACGAAGGTGGTGCTTATCTGGAACACCGATACAAAATGCCATTGATGAGTTATTCAGCTACTTCAGATTTCTGAGATATGACCCCTATGCTGAATATAAATCATTTTGCAGCCAAATTAAGTTTCCAATAGCTATAAACTCAATTAATGGGTATAAAAAGCTTCAAGCGATTTTGAGGGCCATAATGTTGCGACGAACAAAAGGTACACTGATTGACGGTGAGCCAATTATAACCTTACCACCAAAAACTATACAGTTGAAGAAGGTGGCTTTCTCTGCCGAGGAACGCGCTTTCTATAACAAATTAGAAGCTGAATCGCGATCGCAGTTTAAGGCATATGCTGCAGCTGGAACTGTGAAGCAAAACTATGCAAATATCTTATTGATGCTTCTACGACTTCGGCAGGCTTGTGACCACCCAAAACTTGTCAAAAGGGAGAGTTACAATTCTGTTGGAAGAGCTTCATCAGAGATGGCGAGGAAACTCCCAAAGAAAATGGTGGAGGATCTCTTGCAACAATTGGAAACTTCATTGGTAACATGTTCTGTATGCGATGATGTGCCCGAAGATGCAGTTGTCTCCATGTGTGAACATGTGTTCTGCTATCAATGTGTATCAGATTATTTAACTGGGGAAGATAATACATGTCCGGCACTTGGATGCAAAGAGCAACTTGGTCCTGAGGCTGTATATTCTAAAGCTACCCTAAAAACTTGTGTATCAGATGGTGTAAATGGTGATCCTTCCAGCTTGTCTGAATTTGATGAGAAATCCATCATGGAAAATGAGTACATTTCTTCTAAAATAAAAGCTGCTCTTGAAATTCTTCACTCATGTTCTAAGTCAAAGGGTCCTTATTTAGAATCAGATATCTTGGTTCAATGCAATGGCGATTCGTCAAATTTGGGAAAAGCAGATTCAGAATCGCAAGACAAGGGGCCAATAAAGGCCATTATCTTCTCTCAGTGGACAGGCATGTTAAACTTGGTTGAGCGTGCTTTGAACCAGTCTTGTTTTCGGTATGAGAGGCTTGATGGTACAATGTCTCTTGCTGCTAGAGACAGGGCTGTCAAAGAGTTCAACACAAATCCTGAGGTGACTGTCATGTTGATGTCACTAAAGGCTGGAAATCTTGGCCTAAATATGGTGGCAGCTTGTCACGTAATTCTTCTTGACCTTTGGTGGAATCCAACTACTGAAGATCAGGCTATTGATCGAGCTCACAGAATAGGACAAACTCGTGCGGTCACTGTGTCTCGATTAACAATTGAAGGCACAGTTGAAGATCGAATTCTAGCTCTCCAGGAGGACAAAAGAAATATGGTTGCATCCGCTTTTGGTGAAGATCAAAGTGGAGGCACAGCTAGTCGACTAACTGTAGAAGATCTTAGATATCTCTTTAATCTCTAA
Protein:  
MRAHVDPVGGFLEYARTFFFNLVINLLLRHRSHLVGSIFSPMDAISISSDDSDLREIDNYKDDSPLRDSASSRILPPWGTDSSSKRTIYPNGSSSNYHNITDDSGPSSSRASRDGNSKYSSGNDNGKHFPQQTLKRTLPTSFYPSGSVEDIGFSQARQSHERSYQSAWASSSSAGDNYWKDSFNRGNHSELVLYENKGNRVLPPSLMHRRSTSGVQHISVNDPLHYPAKGEDRAAAADERLIFQAALQDLNQPKVEARLPDGLLSVSLLRHQRIALAWTLQKETGSVHCSGGILADDQGLGKTISMIALIQMQRSAQDKSKEKDLDDIKAEALNLDDDDENVAPASQELKQRRETDGVEVIPDARTSIKGFRRRRPAAGTLVVCPASVLRQWARELDEKVTDEASLSILIYHGGNRTKDPVELAKYDVVLTTYAIVTNEVPKQALVEEDDDDQKNGERFGISSDFNSSKKRKKPSLNKKGKKGRKGFDADDFDPNCGGLAKVSWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDELFSYFRFLRYDPYAEYKSFCSQIKFPIAINSINGYKKLQAILRAIMLRRTKGTLIDGEPIITLPPKTIQLKKVAFSAEERAFYNKLEAESRSQFKAYAAAGTVKQNYANILLMLLRLRQACDHPKLVKRESYNSVGRASSEMARKLPKKMVEDLLQQLETSLVTCSVCDDVPEDAVVSMCEHVFCYQCVSDYLTGEDNTCPALGCKEQLGPEAVYSKATLKTCVSDGVNGDPSSLSEFDEKSIMENEYISSKIKAALEILHSCSKSKGPYLESDILVQCNGDSSNLGKADSESQDKGPIKAIIFSQWTGMLNLVERALNQSCFRYERLDGTMSLAARDRAVKEFNTNPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVSRLTIEGTVEDRILALQEDKRNMVASAFGEDQSGGTASRLTVEDLRYLFNL